| Tools for Genetic Data Analysis |
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EasyLinkage
Lindner TH, et al. easyLINKAGE: a PERL
script for easy and automated two-/multi-point linkage
analyses.
Bioinformatics. 2005 Feb 1;21(3):405-7.
Genetic Power Calculator
Purcell S, et al. Genetic Power Calculator: design of
linkage and association genetic mapping studies of
complex traits. Bioinformatics. 2003 Jan;19(1):149-50.
GOLD
Abecasis GR, et al. GOLD--graphical
overview of linkage disequilibrium. Bioinformatics. 2000
Feb;16(2):182-3.
Haploview
Barrett JC, et al. Haploview: analysis and
visualization of LD and haplotype maps. Bioinformatics.
2005 Jan 15;21(2):263-5.
HapMap
The International HapMap Consortium. The
International HapMap Project. Nature. 2003 Dec
18;426(6968):789-96.
MDR
Hahn LW, et al. Multifactor
dimensionality reduction software for detecting gene-gene
and gene-environment interactions. Bioinformatics. 2003
Feb 12;19(3):376-82.
PLINK
Purcell S, et al. PLINK: a tool set for
whole-genome association and population-based linkage
analyses. Am J Hum Genet. 2007 Sep;81(3):559-75.
SNPstats
Solé X, et al. SNPStats: a web tool for the analysis
of association studies. Bioinformatics. 2006 Aug
1;22(15):1928-9.
Structure
Pritchard JK, et al. Inference of population structure
using multilocus genotype data. Genetics. 2000
Jun;155(2):945-59.
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| Genomics Tools |
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BioMart
Durinck S, et al BioMart and
Bioconductor: a powerful link between biological
databases and microarray data analysis. Bioinformatics.
2005 Aug 15;21(16):3439-40.
Galaxy
Giardine B, et al. Galaxy: a platform for
interactive large-scale genome analysis. Genome Res. 2005
Oct;15(10):1451-5.
Genecards
Safran M, et al. Human Gene-Centric
Databases at the Weizmann Institute of Science:
GeneCards, UDB, CroW 21 and HORDE. Nucleic Acids Res.
2003 Jan 1;31(1):142-6.
KEGG pathways
Kanehisa M, et al. KEGG for linking
genomes to life and the environment. Nucleic Acids Res.
2008 Jan;36(Database issue):D480-4.
NCBI BLAST
Wheeler DL, et al. Database resources of the National
Center for Biotechnology Information. Nucleic Acids Res.
2008 Jan;36(Database issue):D13-21.
NCBI GEO
Wheeler DL, et al. Database resources of the National
Center for Biotechnology Information. Nucleic Acids Res.
2008 Jan;36(Database issue):D13-21.
OMIM
Wheeler DL, et al. Database resources of
the National Center for Biotechnology Information.
Nucleic Acids Res. 2008 Jan;36(Database issue):D13-21.
SymAtlas
Su AI, et al. A gene atlas of the mouse and human
protein-encoding transcriptomes. Proc Natl Acad Sci U S
A. 2004 Apr 20;101(16):6062-7.
UCSC Blat
Karolchik D, et al. The UCSC Genome Browser Database:
2008 update. Nucleic Acids Res. 2008 Jan;36(Database
issue):D773-9.
UniHI
Chaurasia G, et al. UniHI: an entry gate
to the human protein interactome. Nucleic Acids Res. 2007
an;35(Database issue):D590-4.
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