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To: Multiple recipients of list HUM-MOLGEN <HUM-MOLGEN@NIC.SURFNET.NL>
Subject: LITE: Nucleic Acids Research 24:15 and 24:16 (August 1996)
From: "Bergen (ioi)" <A.A.Bergen@AMC.UVA.NL>
Date: Thu, 15 Aug 1996 11:52:37 +0200

==========================================
Nucleic Acids Research - ISSN 0305 1048
Volume 24:15
1 August 1996
==========================================

Executive Editors:-
R. T. Walker, Birmingham, UK
R. J. Roberts, Beverly, MA, USA
K. Calame, New York, NY, USA
I. C. Eperon, Leicester, UK
M. J. Gait, Cambridge, UK
H. J. Gross, Wurzburg, Germany
R. I. Gumport, Urbana, IL, USA
R. B. Hallick, Tucson, AZ, USA
S. Linn, Berkeley, CA, USA
R. T. Simpson, University Park, PA, USA
==========================================
CONTENTS
==========================================

NOTE: Abstracts of all these papers are available at the NAR
Online Web site at:
http://www.oup.co.uk/nar/

If you are a subscriber to the print version of NAR, you can also
access the full text of these articles online. For more details of
this service, please see the notes at the foot of this posting, under
the heading 'NAR Online - mini-FAQ'.


============================================

Conservation patterns in angiosperm rDNA ITS2 sequences

        Mark A. Hershkovitz and Elizabeth A. Zimmer

Pages 2857-2868
-------------------------------------------------

Phosphorus 31 solid state NMR characterization of
oligonucleotides covalently bound to a solid support

        P. M. Macdonald, M. J. Damha, K. Ganeshan, R.
        Braich and S. V. Zabarylo

Pages 2868-2876
-------------------------------------------------

Recruitment of damaged DNA to the nuclear matrix in
hamster cells following ultraviolet irradiation

        David R. Koehler and Philip C. Hanawalt

Pages 2877-2884
-------------------------------------------------

Transcriptional terminators of RNA polymerase II are
associated with yeast replication origins

        Shaoxiong Chen, Roxanne Reger, Charles Miller and
        Linda E. Hyman

Pages 2885-2894
-------------------------------------------------

Codon-reading specificity of an unmodified form of
Escherichia coli  {t R N A} sub 1 sup {S e r} in cell-free
protein synthesis

        Kazuyuki Takai, Hiroshi Takaku and Shigeyuki
        Yokoyama

Pages 2894-2900
-------------------------------------------------

Bi-directional gene switching with the tetracycline repressor
and a novel tetracycline antagonist

        Jacqueline Chrast-Balz and Rob Hooft van
        Huijsduijnen

Pages 2900-2904
-------------------------------------------------

Cell cycle-regulated repression of B-myb transcription:
cooperation of an E2F site with a contiguous corepressor
element

        Ningshu Liu, Frances C. Lucibello, Jork Zwicker,
        Kurt Engeland and Rolf Muller

Pages 2905-2910
-------------------------------------------------

Minor groove hydration of DNA in aqueous solution:
sequence-dependent next neighbor effect of the hydration
lifetimes in d(TTAA) 2 segments measured by NMR
spectroscopy

        Anders Jacobson, Werner Leupin, Edvards Liepinsh
        and Gottfried Otting

Pages 2911-2919
-------------------------------------------------

Sequences involved in the dimerisation of human T cell
leukaemia virus type-1 RNA

        Jane S. Greatorex, Valerie Laisse, Marie-Christine
        Dokhelar and Andrew M. L. Lever

Pages 2919-2924
-------------------------------------------------

In vivo degradation of RNA polymerase II largest subunit
triggered by [alpha]-amanitin

        Van Trung Nguyen, Federico Giannoni, Marie-
        Francoise Dubois, Sook-Jae Seo, Marc Vigneron,
        Claude Kedinger and Olivier Bensaude

Pages 2924-2930
-------------------------------------------------

Characterization of a dominant negative mutant form of the
HNF-4 orphan receptor

        David G. Taylor, Sabine Haubenwallner and Todd
        Leff

Pages 2930-2936
-------------------------------------------------

Effects of oligonucleotide length, mismatches and mRNA
levels on C-5 propyne-modified antisense potency

        W. Michael Flanagan, Avinash Kothavale and
        Richard W. Wagner

Pages 2936-2941
-------------------------------------------------

Extrachromosomal, homologous expression of trypanothione
reductase and its complementary mRNA in Trypanosoma
cruzi

        Jorge Tovar and Alan H. Fairlamb

Pages 2942-2949
-------------------------------------------------

TBP binds the transcriptionally inactive TA 5 sequence but
the resulting complex is not efficiently recognised by TFIIB
and TFIIA

        Jordi Bernues, Pilar Carrera  and Fernando Azorin

Pages 2950-2959
-------------------------------------------------

Participation of altered upstream stimulatory factor in the
induction of rat heme oxygenase-1 by cadmium

        Hirotaka Maeshima, Michihiko Sato, Kazunobu
        Ishikawa, Yohtaro Katagata and Tadashi Yoshida

Pages 2959-2965
-------------------------------------------------

Oligo-2 ' -fluoro-2 ' -deoxynucleotide N3 ' -> P5 '
phosphoramidates: synthesis and properties

        Ronald G. Schultz and Sergei M. Gryaznov

Pages 2966-2973
-------------------------------------------------

Oligodeoxynucleotides containing C-7 propyne analogs of 7-
deaza-2 ' -deoxyguanosine and 7-deaza-2 '-deoxyadenosine

        Chris A. Buhr, Richard W. Wagner, Deborah Grant
        and Brian C. Froehler

Pages 2974-2981
-------------------------------------------------

Sequence specific binding of chlamydial histone H1-like
protein

        Ravi Kaul, Michael Allen, E. Morton Bradbury and
        Wanda M. Wenman

Pages 2981-2989
-------------------------------------------------

Molecular cloning of a RNA binding protein, S1-1

        Akira Inoue, Kenichi Paulo Takahashi, Masatsugu
        Kimura, Takanori Watanabe and Seiji Morisawa

Pages 2990-2997
-------------------------------------------------

DNA sequencing by hybridization to microchip octa- and
decanucleotides extended by stacked pentanucleotides

        Sergei Parinov, Victor Barsky, Gennady Yershov,
        Eugene Kirillov, Edward Timofeev, Alexander
        Belgovskiy and Andrei Mirzabekov 1,2,,

Pages 2998-3004
-------------------------------------------------

Misincorporation rate and type on the leading and lagging
strands of UV-damaged DNA

        A. Calcagnile, T. Basic-Zaninovic, F. Palombo w and
        E. Dogliotti

Pages 3005-3009
-------------------------------------------------

Selection of the best target site for ribozyme-mediated
cleavage within a fusion gene for adenovirus E1A-associated
300 kDa protein (p300) and luciferase

        Hiroaki Kawasaki 1-3, Jun Ohkawa, Norie Tanishige,
        Koichi Yoshinari, Takehide Murata, Kazunari K.
        Yokoyama and Kazunari Taira

Pages 3010-3016
-------------------------------------------------

Identification and distribution of seven classes of middle-
repetitive DNA in the Arabidopsis thaliana genome

        Helen L. Thompson, Renate Schmidt [sect] and
        Caroline Dean

Pages 3017-3022
-------------------------------------------------

Cloning and characterization of the major histone H2A genes
completes the cloning and sequencing of known histone
genes of Tetrahymena thermophila

        Xiuwen Liu  and Martin A. Gorovsky

Pages 3023-3031
-------------------------------------------------

Covalent attachment of synthetic DNA to self-assembled
monolayer films

        Linda A. Chrisey, Gil U Lee and C. Elizabeth
        O'Ferrall1,3

Pages 3031-3039
-------------------------------------------------

Fabrication of patterned DNA surfaces

        Linda A. Chrisey, C. Elizabeth O'Ferrall, Barry J.
        Spargo, Charles S. Dulcey and Jeffrey M. Calvert

Pages 3040-3048
-------------------------------------------------

Acid binding and detritylation during oligonucleotide
synthesis

        Carlton H. Paul and A. Timothy Royappa

Pages 3048-3052
-------------------------------------------------

Kinetic studies on depurination and detritylation of CPG-
bound intermediates during oligonucleotide synthesis

        Michael Septak

Pages 3053-3058
-------------------------------------------------

Stability of the human dystrophin transcript in muscle

        Christine N. Tennyson, Qinwei Shi and Ronald G.
        Worton

Pages 3059-3065
-------------------------------------------------

RNase E processing of essential cell division genes mRNA in
Escherichia coli

        Kaymeuang Cam, Gilles Rome, Henry M. Krisch and
        Jean-Pierre Bouche

Pages 3065-3070
-------------------------------------------------

Improving the fidelity of Thermus thermophilus DNA ligase

        Jianying Luo, Donald E. Bergstrom and Francis
        Barany

Pages 3071-3079
-------------------------------------------------

Identification of essential residues in Thermus thermophilus
DNA ligase

        Jianying Luo  and Francis Barany

Pages 3079-3086
-------------------------------------------------

Strand transfer is enhanced by mismatched nucleotides at the
3 ' primer terminus: a possible link between HIV
reverse transcriptase fidelity and recombination

        Leyla Diaz and Jeffrey J. DeStefano

Pages 3086-3093
-------------------------------------------------

Hyper-negative template DNA supercoiling during
transcription of the tetracycline-resistance gene in
topA mutants is largely constrained in vivo

        Annie-Claude Albert, Flavia Spirito, Nara Figueroa-
        Bossi, Lionello Bossi and A. Rachid Rahmouni

Pages 3093-3099
-------------------------------------------------

Role of TATA box sequence and orientation in determining
RNA polymerase II/III transcription specificity

        Yan Wang, Richard C. Jensen and William E. Stumph

Pages 3100-3106
-------------------------------------------------

Phosphorylation of human replication protein A by the DNA-
dependent protein kinase is involved in the modulation of
DNA replication

        Leigh A. Henricksen, Timothy Carter, Anindya Dutta
        and Marc S. Wold

Pages 3107-3112
-------------------------------------------------

The use of histone as a facilitator to improve the efficiency of
retroviral gene transfer

        Devender Singh  and Peter W. J. Rigby

Pages 3113-3114
-------------------------------------------------

Cleavage of oligodeoxyribonucleotides from controlled-pore
glass supports and their rapid deprotection by gaseous amines

        Jila H. Boal, Andrzej Wilk, Nagaradona Harindranath,
        Edward E. Max, Tomas Kempe and Serge L.
        Beaucage

Pages 3115-3117
-------------------------------------------------

A simple assay to determine the functionality of Cre or FLP
recombination targets in genomic manipulation constructs

        Frank Buchholz, Pierre-Olivier Angrand and A.
        Francis Stewart

Pages 3118-3119

==========================================
Nucleic Acids Research is published 25 times a year by
Oxford University Press.

The papers listed above appear in the 1 August 1996 issue. If you
would like further details about Nucleic Acids Research,
including instructions for authors or details of subscription
rates, please contact:-

Richard Gedye
Oxford University Press
Walton Street
Oxford
OX2 6DP
United Kingdom
Tel: +44 1865 267785
Fax: +44 1865 267782
E-mail:  gedyer@oup.co.uk

Copyright in the table of contents listed above is held by
Oxford University Press, but you are welcome to circulate
it further, provided that Oxford University Press is
credited as publisher and copyright holder.
===============================================


NAR ONLINE - MINI-FAQ

WHAT SPECIAL FEATURES DOES NAR ONLINE OFFER?

* You can obtain articles online in advance of hard copy.

* You can browse current and forthcoming issues, as well as a
three year back file

* You can search all the issues, by author and keyword (in title,
abstract, or full text)

* You can choose the format in which you want your articles
delivered:-
     HTML for quick and easy screen reading, as well as easy
printability
     PDF for quick screen browsing and superb printing quality
     Postscript for superb printing quality without the need to
view the article first
     Printerleaf if you want to use the same software as NAR on
CD-ROM

* You can go directly from references to their Medline Abstracts

* You can go directly to genetic sequencing databases referred
to in articles

* You can receive advance notice by e-mail of papers to be
published.


HOW DO I ACCESS NAR ONLINE?

Simply go to http://www.oup.co.uk/nar/

For 1996, you can access the complete text of NAR Online  if:-

1. You have your own personal print subscription

Just visit the NAR Online web site to register. You'll need to
have your subscriber number ready (it's printed on your
subscription address label that comes with each issue).

2. Your institution has a library subscription

Ask your librarian for the library's subscription number, then
register yourself at the NAR Online web site. Remember to use
your own name when you register (not that of the library) and to
create your own personal password. Then we can send you
advance table of contents information by e-mail and also let you
know immediately of any changes or enhancements to the online
access system.


WHAT IF NEITHER I NOR MY LIBRARY HAVE A
CURRENT SUBSCRIPTION?

In 1996, you can still visit NAR Online and browse or search the
titles and abstracts as a visitor. But you won't be able to access
the full text of articles.


I'M THINKING OF SUBSCRIBING - CAN I SEE A SAMPLE
ONLINE ISSUE FIRST?

Yes.  You'll find when you come to our site as a visitor that you
can access the full text of Volume 23, Issue 24 (the last issue of
1995)

-------------------------------------
We hope you find this information helpful. All questions,
comments and suggestions, etc. on NAR Online's quality, speed,
ease of use, facilities, and options will continue to be greatly
welcomed.
We've already done a lot to enhance NAR Online as a result of
the feedback so far, and we look forward to continuing to do so.

Best wishes,

===========================
Richard Gedye
Oxford University Press
Walton Street
Oxford
OX2 6DP
England

Tel:      +44 1865 267785 (direct)
Fax:     +44 1865 267835
E-mail:  gedyer@oup.co.uk
World Wide Web site: http://www.oup.co.uk/
===========================
**********************************************************************
==========================================
Nucleic Acids Research - ISSN 0305 1048
Volume 24:16
15 August 1996
==========================================

Executive Editors:-
R. T. Walker, Birmingham, UK
R. J. Roberts, Beverly, MA, USA
K. Calame, New York, NY, USA
I. C. Eperon, Leicester, UK
M. J. Gait, Cambridge, UK
H. J. Gross, Wurzburg, Germany
R. I. Gumport, Urbana, IL, USA
R. B. Hallick, Tucson, AZ, USA
S. Linn, Berkeley, CA, USA
R. T. Simpson, University Park, PA, USA
==========================================
CONTENTS
==========================================

NOTE: Abstracts of all these papers are available at the NAR
Online Web site at:
http://www.oup.co.uk/nar/

If you are a subscriber to the print version of NAR, you can also
access the full text of these articles online. For more details of
this service, please see the notes at the foot of this posting, under
the heading 'NAR Online - mini-FAQ'.

==========================================

Expanding the Mot1 subfamily: 89B helicase encodes a new
Drosophila  melanogaster SNF2-related protein which binds
to multiple sites on polytene chromosomes

        Ronit Goldman-Levi, Chaya Miller, Joel Bogoch and
        Naomi B. Zak

Pages 3121-3129
-------------------------------------------------

Site specific labelling of sugar residues in
oligoribonucleotides: reactions of aliphatic isocyanates with 2
' amino groups

        Snorri Th. Sigurdsson and Fritz Eckstein

Pages 3129-3134
-------------------------------------------------

DNA-binding properties of Arabidopsis MADS domain
homeotic proteins APETALA1, APETALA3, PISTILLATA
and AGAMOUS

        Jose Luis Riechmann, Minqin Wang and Elliot M.
        Meyerowitz

Pages 3134-3142
-------------------------------------------------

Regioselective immobilization of short oligonucleotides to
acrylic copolymer gels

        Edward N. Timofeev, Svetlana V. Kochetkova,
        Andrei D. Mirzabekov and Vladimir L. Florentiev

Pages 3142-3149
-------------------------------------------------

Inhibition of initiation of simian virus 40 DNA replication
during acute response of cells irradiated by ultraviolet light

        Yi-Ching Wang and Ming-Ta Hsu

Pages 3149-3157
-------------------------------------------------

An RNase P RNA subunit mutation affects ribosomal RNA
processing

        Joel R. Chamberlain, Eileen Pagan-Ramos, David W.
        Kindelberger and David R. Engelke

Pages 3158-3167
-------------------------------------------------

A functional role for some Fugu introns larger than the
typical short ones: the example of the gene coding for
ribosomal protein S7 and snoRNA U17

        Francesco Cecconi, Claudia Crosio, Paolo Mariottini,
        Gianni Cesareni, Marcello Giorgi, Sydney Brenner
        and Francesco Amaldi

Pages 3167-3172
-------------------------------------------------

Preparation of oligoribonucleotides containing 4-thiouridine
using Fpmp chemistry. Photo-crosslinking to RNA binding
proteins using 350 nm irradiation

        A. McGregor, M. Vaman Rao, G. Duckworth, P. G.
        Stockley and B. A. Connolly

Pages 3173-3181
-------------------------------------------------

Effect of third strand composition on triple helix
formation: purine versus pyrimidine oligodeoxynucleotides

        Bruno Faucon, Jean-Louis Mergny and Claude
        Helene

Pages 3181-3188
-------------------------------------------------

Reliable genotyping of samples with very low DNA
quantities using PCR

        Pierre Taberlet, Sally Griffin, Beno&icirc;t Goossens,
        Sophie Questiau, Valerie Manceau, Nathalie
        Escaravage, Lisette P. Waits and Jean Bouvet

Pages 3189-3194
-------------------------------------------------

A nascent micronuclear pseudogene in the ciliate Euplotes
crassus

        Volker Florian and Albrecht Klein

Pages 3195-3201
-------------------------------------------------

18S rRNA processing requires the RNA helicase-like protein
Rrp3

        Christine L. O'Day, Finny Chavanikamannil and John
        Abelson

Pages 3201-3207
-------------------------------------------------

The DNA supercoiling architecture induced by the
transcription factor xUBF requires three of its five
HMG-boxes

        V. Y. Stefanovsky, D. P. Bazett-Jones, G. Pelletier
        and T. Moss

Pages 3208-3215
-------------------------------------------------

Multiple phenotypes associated with Myc-induced
transformation of chick embryo fibroblasts can be dissociated
by a basic region mutation

        D. H. Crouch, R. Gallagher, C. R. Goding, J. C. Neil
        and R. Fulton

Pages 3216-3222
-------------------------------------------------

Identification of in vivo target RNA sequences bound by
thymidylate synthase

        Edward Chu, Tiziana Cogliati, Sitki M. Copur, Aldo
        Borre, Donna M. Voeller, Carmen J. Allegra and
        Shoshana Segal

Pages 3222-3228
-------------------------------------------------

RNA editing of larch mitochondrial tRNAHis precursors  is a
prerequisite for processing

        Laurence Marechal-Drouard, Raman Kumar, Claire
        Remacle [sect] and Ian Small

Pages 3229-3234
-------------------------------------------------

Characterization of the rat mdr2 promoter and its regulation
by the transcription factor Sp1

        Paul C. Brown and Jeffrey A. Silverman

Pages 3235-3241
-------------------------------------------------

Quantitative measurement of dihydrouridine in RNA using
isotope dilution liquid chromatography-mass spectrometry
(LC/MS)

        Joseph J. Dalluge, Takeshi Hashizume and James A.
        McCloskey

Pages 3242-3246
-------------------------------------------------

Kinetics of spontaneous displacement of RNA from
heteroduplexes by DNA

        Ralf Landgraf, Kumaran S. Ramamurthi and David S.
        Sigman

Pages 3246-3253
-------------------------------------------------

Evidence for three major transcription activation elements in
the proximal mouse pro [alpha]2(I) collagen promoter

        Tadao Hasegawa, Xin Zhou, Lee Ann Garrett, E.
        Cristy Ruteshouser, Sankar N. Maity and Benoit de
        Crombrugghe

Pages 3253-3261
-------------------------------------------------

Hydration of single-stranded phosphodiester and
phosphorothioate oligodeoxyribonucleotides

        A. P. White, K. K. Reeves, E. Snyder, J. Farrell, J. W.
        Powell, V. Mohan, R. H. Griffey and H. Sasmor1

Pages 3261-3266
-------------------------------------------------

Methylation inhibitors can increase the rate of cytosine
deamination by (cytosine-5)-DNA methyltransferase

        Jean-Marc Zingg, Jiang-Cheng Shen, Allen S. Yang,
        Henry Rapoport w and Peter A. Jones

Pages 3267-3276
-------------------------------------------------

An efficient PCR mutagenesis strategy without gel
purificiation step that is amenable to automation

        Bertrand Seraphin and Stefanie Kandels-Lewis

Pages 3276-3278
-------------------------------------------------

An efficient method for generation and subcloning of
tandemly repeated DNA sequences with defined length,
orientation and spacing

        Shi-Wen Jiang, Miguel A. Trujillo and Norman L.
        Eberhardt

Pages 3278-3279
-------------------------------------------------

A rapid method for detecting specific amplified PCR
fragments in microtiter plates

        A. Ortiz and E. Ritter

Pages 3280-3282

==========================================
Nucleic Acids Research is published 25 times a year by
Oxford University Press.

The papers listed above appear in the 15 August 1996 issue. If you
would like further details about Nucleic Acids Research,
including instructions for authors or details of subscription
rates, please contact:-

Richard Gedye
Oxford University Press
Walton Street
Oxford
OX2 6DP
United Kingdom
Tel: +44 1865 267785
Fax: +44 1865 267782
E-mail:  gedyer@oup.co.uk

Copyright in the table of contents listed above is held by
Oxford University Press, but you are welcome to circulate
it further, provided that Oxford University Press is
credited as publisher and copyright holder.
===============================================


NAR ONLINE - MINI-FAQ

WHAT SPECIAL FEATURES DOES NAR ONLINE OFFER?

* You can obtain articles online in advance of hard copy.

* You can browse current and forthcoming issues, as well as a
three year back file

* You can search all the issues, by author and keyword (in title,
abstract, or full text)

* You can choose the format in which you want your articles
delivered:-
     HTML for quick and easy screen reading, as well as easy
printability
     PDF for quick screen browsing and superb printing quality
     Postscript for superb printing quality without the need to
view the article first
     Printerleaf if you want to use the same software as NAR on
CD-ROM

* You can go directly from references to their Medline Abstracts

* You can go directly to genetic sequencing databases referred
to in articles

* You can receive advance notice by e-mail of papers to be
published.


HOW DO I ACCESS NAR ONLINE?

Simply go to http://www.oup.co.uk/nar/

For 1996, you can access the complete text of NAR Online  if:-

1. You have your own personal print subscription

Just visit the NAR Online web site to register. You'll need to
have your subscriber number ready (it's printed on your
subscription address label that comes with each issue).

2. Your institution has a library subscription

Ask your librarian for the library's subscription number, then
register yourself at the NAR Online web site. Remember to use
your own name when you register (not that of the library) and to
create your own personal password. Then we can send you
advance table of contents information by e-mail and also let you
know immediately of any changes or enhancements to the online
access system.


WHAT IF NEITHER I NOR MY LIBRARY HAVE A
CURRENT SUBSCRIPTION?

In 1996, you can still visit NAR Online and browse or search the
titles and abstracts as a visitor. But you won't be able to access
the full text of articles.


I'M THINKING OF SUBSCRIBING - CAN I SEE A SAMPLE
ONLINE ISSUE FIRST?

Yes.  You'll find when you come to our site as a visitor that you
can access the full text of Volume 23, Issue 24 (the last issue of
1995)

-------------------------------------
We hope you find this information helpful. All questions,
comments and suggestions, etc. on NAR Online's quality, speed,
ease of use, facilities, and options will continue to be greatly
welcomed.
We've already done a lot to enhance NAR Online as a result of
the feedback so far, and we look forward to continuing to do so.

Best wishes,

===========================
Richard Gedye
Oxford University Press
Walton Street
Oxford
OX2 6DP
England

Tel:      +44 1865 267785 (direct)
Fax:     +44 1865 267835
E-mail:  gedyer@oup.co.uk
World Wide Web site: http://www.oup.co.uk/
===========================


   
 
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